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Posts tagged ‘Rabdano’

Histone H4 tails in nucleosomes: a fuzzy interaction with DNA

Posted: 24.02.2021

Sevastyan O. Rabdano, Matthew D. Shannon, Sergei A. Izmailov, Nicole Gonzalez Salguero, Mohamad Zandian, Rudra N. Purusottam, Michael G. Poirier, Nikolai R. Skrynnikov and Christopher P. Jaroniec



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Structural and dynamic origins of ESR lineshapes in spin-labeled GB1 domain: the insights from spin dynamics simulations based on long MD trajectories

Posted: 20.01.2020

Izmailov, S.A, Rabdano, S.O., Hasanbasri, Z., Podkorytov, I.S., Saxena, S., Skrynnikov, N.R. Structural and dynamic origins of ESR lineshapes in spin-labeled GB1 domain: the insights from spin dynamics simulations based on long MD trajectories. Scientific Reports 2020.

DOI: 10.1038/s41598-019-56750-y


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Joint 12-th EBSA 10-th ICBP-IUPAP Biophysics Congress, Madrid, Spain

Posted: 20.07.2019

Sevastyan Rabdano took part in the biophysical congress of European Biophysical Societies Association with the oral talk “Histones in nucleosome: fuzzy interaction with DNA”. The conference was held on July 20-24, 2019 in Madrid.


4-th annual meeting of Institute of Translational Biomedicine of SPbSU, Saint Petersburg, Russia

Posted: 20.07.2018

Boris Kharkov, Sergey Izmailov, Sevastyan Rabdano, Nikolai Skrynnikov, Dmitry Luzik, Olga Rogacheva and Ivan Podkorytov took part in the fourth annual conference of the Institute of Translational Biomedicine, which was held on July 20-22, 2018 in St. Petersburg.

Sergei Izmailov presented the report “EPR tags as a probe for studying protein systems: what the spectra say.”

Ivan Podkorytov presented the report “Research of mobile Sup35NM protein sites in monomers and in the composition of fibrils by NMR with diffusion filter”.

Olga Rogacheva presented the report “Bioconjugation of peptides in the context of targeted therapy: modeling and experiment.”

Dmitry Luzik presented the report “Covalent binding of modified Sos1-derived peptide and N-terminal SH3-domain of adapter protein Grb2”.

Sevastyan Rabdano presented the report “ESR spectroscopy as a probe of protein dynamics: an insight from long MD simulations”.

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FEBS Congress 2018, Prague, Czech Republic

Posted: 07.07.2018

Sevastyan Rabdano and Sergei Izmailov took part in the FEBS Congress on July 7-12, 2018 in Prague.

Sevastyan Rabdano presented the poster “ESR spectroscopy as a probe of protein dynamics: the effect of different motional modes on the simulated lineshapes”.

Sergei Izmailov presented the poster “ESR spectroscopy as a probe of protein dynamics: an insight from long MD simulations”.

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Sevastyan Rabdano defended PhD thesis

Posted: 20.06.2018

On June 20, Sevastyan Rabdano successfully defended his PhD thesis “Development of NMR methods for studying the state of biological molecules under conditions of redox processes”. Major specialization: “Physics of magnetic phenomena”.


15-th International School-Conference Magnetic resonance and its applications Spinus 2018

Posted: 01.04.2018

Sergey Izmailov, Sevastyan Rabdano, Nikolai Skrynnikov, Boris Kharkov and Vladislav Salikov took part in the 15th international school-conference “Magnetic Resonance and Its Applications, Spinus” held on April 1-6, 2018.

Sergey Izmailov presented the report “EPR spectra simulation from MD data using Redfield theory and direct propagation method”.

Sevastyan Rabdano presented the report “Dynamic modes in spin-labeled protein revealed by MD simulations: experimental and computed EPR spectra”.

Nikolai Skrynnikov presented the lecture “Many faces of disulfide bond”.

Boris Kharkov presented the report “Skin-Effect Compensated Optimal Control Pulses for Excitation in a Conductive Medium”.

Vladislav Salikov presented the poster “Optimization of bacterial expression of MdmX N-terminal domain for NMR studies”.

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BioHack 2018

Posted: 03.03.2018

Sevastyan Rabdano’s Good Vibrations team won first place at the BIoHack 2018 bioinformatics hackathon with the project “Drosophila Sound Product Analysis”.


FEBS congress, Jerusalem, Israel

Posted: 14.09.2017

Ivan Podkorytov, Sevastyan Rabdano, Olga Rogacheva, Kerstin Kaempf and Dmitri Luzik attended the FEBS congress in Jerusalem, Israel.

Kerstin Kaempf presented short oral talk “Local and global dynamics of intrinsically disordered proteins: a case study of H4 histone tail”.

Ivan Podkorytov presented poster “Detection of flexible portion of protein chain in Sup35NM amyloid fibrils by means of diffusion-filtered NMR experiment”.

Sevastyan Rabdano presented poster “Characterizing the Size of Protein Aggregate Particles Using a Combination of NMR Diffusion Measurements and Dynamic Light Scattering: Case Study of RRM2 Domain from Protein TDP-43”.

Olga Rogacheva presented poster “New linear interaction between charged lysine side chain and carbonyl group in protein structures”.

Dmitry Luzik presented poster “Non-native disulfide bridges in protein-peptide complex and in protein homodimers trigger unfolding and aggregation”.

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Onset of disorder and protein aggregation due to oxidation-induced intermolecular disulfide bonds: case study of RRM2 domain from TDP-43

Posted: 11.09.2017

Rabdano, S. O.; Izmailov, S. A.; Luzik, D. A.; Groves, A.; Podkorytov, I. S.; Skrynnikov, N. R. Onset of Disorder and Protein Aggregation due to Oxidation-Induced Intermolecular Disulfide Bonds: Case Study of RRM2 Domain from TDP-43. Scientific Reports 20177 (1), 11161.

DOI: 10.1038/s41598-017-10574-w.


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