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Posts tagged ‘Podkorytov’

The Role of Rotational Motion in Diffusion NMR Experiments on Supramolecular Assemblies: Application to Sup35NM Fibrils

Posted: 23.04.2021

Dr. Boris B. Kharkov, Ivan S. Podkorytov, Dr. Stanislav A. Bondarev, Dr. Mikhail V. Belousov, Vladislav A. Salikov, Prof. Dr. Galina A. Zhouravleva, Prof. Dr. Nikolai R. Skrynnikov

https://doi.org/10.1002/anie.202102408

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Structural and dynamic origins of ESR lineshapes in spin-labeled GB1 domain: the insights from spin dynamics simulations based on long MD trajectories

Posted: 20.01.2020

Izmailov, S.A, Rabdano, S.O., Hasanbasri, Z., Podkorytov, I.S., Saxena, S., Skrynnikov, N.R. Structural and dynamic origins of ESR lineshapes in spin-labeled GB1 domain: the insights from spin dynamics simulations based on long MD trajectories. Scientific Reports 2020.

DOI: 10.1038/s41598-019-56750-y

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Luminescent Complexes of the Trinuclear Silver(I) and Copper(I) Pyrazolates Supported with Bis(diphenylphosphino)methane

Posted: 19.06.2019

Titov, A. A., Filippov, O. A., Smol’yakov, A. F., Godovikov, I. A., Shakirova, J. R., Tunik, S. P., Podkorytov, I. S. & Shubina, E. S. Luminescent Complexes of the Trinuclear Silver(I) and Copper(I) Pyrazolates Supported with Bis(diphenylphosphino)methane. Inorg. Chem. 58, 8645–8656 (2019).

DOI: 10.1021/acs.inorgchem.9b00991

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Multiplet-Matched Filtering of 103Rh Signal Using Information Contained in 31P Spectrum of AA´xXX´x 31P–103Rh Spin System

Posted: 10.10.2018

Podkorytov, I. S., Cherkasova, T. G., Kayfadzhyan, E. A. & Varshavsky, Yu. S. Multiplet-Matched Filtering of 103Rh Signal Using Information Contained in 31P Spectrum of AA′XX′ 31P–103Rh Spin System. Appl Magn Reson 50, 563–568 (2019).

DOI: 10.1007/s00723-018-1083-1

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13C NMR spectrum of crystalline [Rh(Acac) (CO)2]: A contribution to the discussion on [Rh(Acac) (CO)2] molecular structure in the solid state

Posted: 11.08.2018

Varshavsky, Yu. S., Cherkasova, T. G., Galding, M. R., Korlyukov, A. A., Podkorytov, I. S., Gindin, V. A., Smirnov, S. N., Mazur, A. S. & Rubaylo, A. I. 13C NMR spectrum of crystalline [Rh(Acac) (CO)2]: A contribution to the discussion on [Rh(Acac) (CO)2] molecular structure in the solid state. Journal of Organometallic Chemistry 874, 70–73 (2018).

DOI: 10.1016/j.jorganchem.2018.08.009

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4-th annual meeting of Institute of Translational Biomedicine of SPbSU, Saint Petersburg, Russia

Posted: 20.07.2018

Boris Kharkov, Sergey Izmailov, Sevastyan Rabdano, Nikolai Skrynnikov, Dmitry Luzik, Olga Rogacheva and Ivan Podkorytov took part in the fourth annual conference of the Institute of Translational Biomedicine, which was held on July 20-22, 2018 in St. Petersburg.

Sergei Izmailov presented the report “EPR tags as a probe for studying protein systems: what the spectra say.”

Ivan Podkorytov presented the report “Research of mobile Sup35NM protein sites in monomers and in the composition of fibrils by NMR with diffusion filter”.

Olga Rogacheva presented the report “Bioconjugation of peptides in the context of targeted therapy: modeling and experiment.”

Dmitry Luzik presented the report “Covalent binding of modified Sos1-derived peptide and N-terminal SH3-domain of adapter protein Grb2”.

Sevastyan Rabdano presented the report “ESR spectroscopy as a probe of protein dynamics: an insight from long MD simulations”.

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FEBS congress, Jerusalem, Israel

Posted: 14.09.2017

Ivan Podkorytov, Sevastyan Rabdano, Olga Rogacheva, Kerstin Kaempf and Dmitri Luzik attended the FEBS congress in Jerusalem, Israel.

Kerstin Kaempf presented short oral talk “Local and global dynamics of intrinsically disordered proteins: a case study of H4 histone tail”.

Ivan Podkorytov presented poster “Detection of flexible portion of protein chain in Sup35NM amyloid fibrils by means of diffusion-filtered NMR experiment”.

Sevastyan Rabdano presented poster “Characterizing the Size of Protein Aggregate Particles Using a Combination of NMR Diffusion Measurements and Dynamic Light Scattering: Case Study of RRM2 Domain from Protein TDP-43”.

Olga Rogacheva presented poster “New linear interaction between charged lysine side chain and carbonyl group in protein structures”.

Dmitry Luzik presented poster “Non-native disulfide bridges in protein-peptide complex and in protein homodimers trigger unfolding and aggregation”.

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Onset of disorder and protein aggregation due to oxidation-induced intermolecular disulfide bonds: case study of RRM2 domain from TDP-43

Posted: 11.09.2017

Rabdano, S. O.; Izmailov, S. A.; Luzik, D. A.; Groves, A.; Podkorytov, I. S.; Skrynnikov, N. R. Onset of Disorder and Protein Aggregation due to Oxidation-Induced Intermolecular Disulfide Bonds: Case Study of RRM2 Domain from TDP-43. Scientific Reports 20177 (1), 11161.

DOI: 10.1038/s41598-017-10574-w.

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Characterizing the size of protein aggregate particles using a combination of NMR diffusion measurements and dynamic light scattering: case study of RRM2 domain from protein TDP-43

Posted: 08.09.2017

Rabdano, S.; Podkorytov, I.; Luzik, D.; Skrynnikov, N. Characterizing the Size of Protein Aggregate Particles Using a Combination of NMR Diffusion Measurements and Dynamic Light Scattering: Case Study of RRM2 Domain from Protein TDP-43. The FEBS Journal 2017284 (Suppl. 1), 212.

DOI: 10.1111/febs.14174.

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Detection of flexible portion of protein chain in Sup35NM amyloid fibrils by means of diffusion-filtered NMR experiment

Posted: 08.09.2017

Podkorytov, I. S.; Belousov, M.; Bondarev, S.; Kaempf, K.; Zhouravleva, G.; Dvinskikh, S. V.; Skrynnikov, N. R. Detection of Flexible Portion of Protein Chain in Sup35NM Amyloid Fibrils by Means of Diffusion-Filtered NMR Experiment. The FEBS Journal 2017284 (Suppl. 1), 215.

DOI: 10.1111/febs.14174.

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